This lesson is still being designed and assembled (Pre-Alpha version)

Analysing ChIP-seq and ATAC-seq data

FIXME: home page introduction

Prerequisites

FIXME

Schedule

Setup Download files required for the lesson
00:00 1. Introduction Key question (FIXME)
00:00 2. Finding and downloading raw data Key question (FIXME)
00:00 3. Aligning data to a genome Key question (FIXME)
00:00 4. Visualising aligned reads Key question (FIXME)
00:00 5. Working with cluster queuing systems Key question (FIXME)
00:00 6. Peak calling with MACS2 Key question (FIXME)
00:00 7. Finding overlapping peaks Key question (FIXME)
00:00 8. Calling differential accessibility using DESeq2 Key question (FIXME)
00:00 9. Motif analysis Key question (FIXME)
00:00 Finish

The actual schedule may vary slightly depending on the topics and exercises chosen by the instructor.